Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs2490052 chr6:3865946 C/T 5.78E-6 473 24.27 29.23 31.43 KM Plot
PRAD rs2490054 chr6:3867557 T/G 5.14E-6 478 24.27 29.1 31.68 KM Plot
PRAD rs2490055 chr6:3867571 A/C 5.02E-6 478 24.27 29.17 31.93 KM Plot
PRAD rs2496386 chr6:3868043 C/A 4.84E-6 480 24.27 29.17 31.43 KM Plot
PRAD rs2497058 chr13:19967698 A/G 2.64E-5 472 31.13 30.85 30.73 KM Plot
PRAD rs2511096 chr11:71564029 C/T 5.88E-5 493 31.27 28.57 20.93 KM Plot
PRAD rs2513873 chr8:103995624 A/G 0.00016 493 31.13 29.72 16.58 KM Plot
PRAD rs2513874 chr8:104000065 C/A 0.000155 494 31.18 29.72 16.58 KM Plot
PRAD rs2516531 chr22:21361774 C/T 8.33E-5 477 31.27 28.43 30.4 KM Plot
PRAD rs2516539 chr22:21362721 G/C 9.52E-5 483 31.27 28.78 29.4 KM Plot
PRAD rs2516541 chr22:21363341 T/C 4.7E-9 485 31.27 28.78 29.27 KM Plot
PRAD rs2516542 chr22:21363505 C/T 4.65E-9 486 31.27 28.78 29.27 KM Plot
PRAD rs2516545 chr22:21364867 T/A 9.87E-5 486 27.97 31.25 31.4 KM Plot
PRAD rs2516552 chr22:21365887 A/T 4.48E-9 475 31.27 28.78 30.4 KM Plot
PRAD rs2530595 chr4:3245057 C/T 1.35E-5 482 30.9 30.48 33.37 KM Plot